.command.sh - Workdir - SOMATIC_CNV_REF_BUILDER:SOMA_CNV_BUILD_REFERENCE (build_reference)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/43d1b8afbd14cc77e44b4760386d15/.command.sh
Size: 334 bytes
Task: SOMATIC_CNV_REF_BUILDER:SOMA_CNV_BUILD_REFERENCE (build_reference)
Attempt

Content

#!/bin/bash -Ceuo pipefail
python /usr/local/bin/build_norm_reference.py \
    --manifest manifest.tsv \
    --gc-reference /usr/local/share/probe_gc_content.tsv \
    --output-dir . \
    --workers 16

cat <<-END_VERSIONS > versions.yml
"SOMATIC_CNV_REF_BUILDER:SOMA_CNV_BUILD_REFERENCE":
    soma-cnv: 20260604-3cb5ec5
END_VERSIONS