Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1I8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1I8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_1I8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_1I8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55176891 total, 53801 skipped (flags/unmapped)
Fragments: 27892807 total (27203978 tlen-paired, 5243 hash-paired, 5790 singletons, 5544 discordant, 672252 orphans, 7759 too large [>5000 bp], 3749060 duplicates)
Reads: 59465991 total, 47168 skipped (flags/unmapped)
Fragments: 30082310 total (29304602 tlen-paired, 3917 hash-paired, 5903 singletons, 5748 discordant, 762140 orphans, 11123 too large [>5000 bp], 4014541 duplicates)
Reads: 60310068 total, 47295 skipped (flags/unmapped)
Fragments: 30522133 total (29714157 tlen-paired, 4520 hash-paired, 5773 singletons, 4487 discordant, 793196 orphans, 8738 too large [>5000 bp], 4045106 duplicates)
Reads: 62565386 total, 81008 skipped (flags/unmapped)
Fragments: 32116650 total (29440746 tlen-paired, 4725 hash-paired, 5966 singletons, 532191 discordant, 2133022 orphans, 195033 too large [>5000 bp], 4126798 duplicates)