Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_35B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_35B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_35B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_35B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86517540 total, 75600 skipped (flags/unmapped)
Fragments: 43415287 total (42972672 tlen-paired, 24102 hash-paired, 8162 singletons, 8193 discordant, 402158 orphans, 10843 too large [>5000 bp], 6459337 duplicates)
Reads: 93363890 total, 67497 skipped (flags/unmapped)
Fragments: 46866934 total (46372163 tlen-paired, 25202 hash-paired, 8289 singletons, 8416 discordant, 452864 orphans, 11839 too large [>5000 bp], 6908206 duplicates)
Reads: 93804977 total, 66196 skipped (flags/unmapped)
Fragments: 47096781 total (46589534 tlen-paired, 24821 hash-paired, 8342 singletons, 7017 discordant, 467067 orphans, 10314 too large [>5000 bp], 6940455 duplicates)
Reads: 95308530 total, 113982 skipped (flags/unmapped)
Fragments: 48079313 total (46582174 tlen-paired, 23731 hash-paired, 8565 singletons, 290098 discordant, 1174745 orphans, 109616 too large [>5000 bp], 7013749 duplicates)