Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 105003186 total, 81488 skipped (flags/unmapped)
Fragments: 52709698 total (52147197 tlen-paired, 27662 hash-paired, 10297 singletons, 11589 discordant, 512953 orphans, 12776 too large [>5000 bp], 8608956 duplicates)
Reads: 106426023 total, 93066 skipped (flags/unmapped)
Fragments: 53403229 total (52854119 tlen-paired, 26524 hash-paired, 10488 singletons, 13155 discordant, 498943 orphans, 17965 too large [>5000 bp], 8786936 duplicates)
Reads: 115777832 total, 79736 skipped (flags/unmapped)
Fragments: 58123297 total (57505154 tlen-paired, 27379 hash-paired, 10996 singletons, 10676 discordant, 569092 orphans, 15795 too large [>5000 bp], 9443966 duplicates)
Reads: 116454593 total, 136139 skipped (flags/unmapped)
Fragments: 58716850 total (56973766 tlen-paired, 25323 hash-paired, 11438 singletons, 338361 discordant, 1367962 orphans, 132077 too large [>5000 bp], 9511401 duplicates)