Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80186690 total, 72367 skipped (flags/unmapped)
Fragments: 40274932 total (39796965 tlen-paired, 12686 hash-paired, 7760 singletons, 9402 discordant, 448119 orphans, 10169 too large [>5000 bp], 5500830 duplicates)
Reads: 79592011 total, 65893 skipped (flags/unmapped)
Fragments: 39990265 total (39485388 tlen-paired, 12011 hash-paired, 7483 singletons, 8420 discordant, 476963 orphans, 15017 too large [>5000 bp], 5424755 duplicates)
Reads: 87764554 total, 62426 skipped (flags/unmapped)
Fragments: 44107740 total (43554153 tlen-paired, 12484 hash-paired, 8243 singletons, 7409 discordant, 525451 orphans, 10171 too large [>5000 bp], 5956881 duplicates)
Reads: 88418759 total, 105306 skipped (flags/unmapped)
Fragments: 44688784 total (43048198 tlen-paired, 11286 hash-paired, 8231 singletons, 326121 discordant, 1294948 orphans, 119532 too large [>5000 bp], 5984811 duplicates)