Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87551130 total, 78276 skipped (flags/unmapped)
Fragments: 43940963 total (43483537 tlen-paired, 17509 hash-paired, 8329 singletons, 8747 discordant, 422841 orphans, 11049 too large [>5000 bp], 6709478 duplicates)
Reads: 93531563 total, 64126 skipped (flags/unmapped)
Fragments: 46970215 total (46454086 tlen-paired, 18048 hash-paired, 8693 singletons, 6474 discordant, 482914 orphans, 9307 too large [>5000 bp], 7106722 duplicates)
Reads: 95614117 total, 115391 skipped (flags/unmapped)
Fragments: 48259142 total (46690678 tlen-paired, 16701 hash-paired, 8838 singletons, 301289 discordant, 1241636 orphans, 115458 too large [>5000 bp], 7231123 duplicates)
Reads: 94624158 total, 68037 skipped (flags/unmapped)
Fragments: 47502942 total (47002093 tlen-paired, 16266 hash-paired, 8769 singletons, 8598 discordant, 467216 orphans, 13111 too large [>5000 bp], 7213706 duplicates)