Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90248035 total, 92288 skipped (flags/unmapped)
Fragments: 45333633 total (44768997 tlen-paired, 19605 hash-paired, 8981 singletons, 11696 discordant, 524354 orphans, 10908 too large [>5000 bp], 6642620 duplicates)
Reads: 97060584 total, 89919 skipped (flags/unmapped)
Fragments: 48771361 total (48130593 tlen-paired, 21422 hash-paired, 9522 singletons, 12399 discordant, 597425 orphans, 17445 too large [>5000 bp], 7092017 duplicates)
Reads: 97777086 total, 87748 skipped (flags/unmapped)
Fragments: 49137558 total (48493707 tlen-paired, 20151 hash-paired, 9353 singletons, 9566 discordant, 604781 orphans, 14178 too large [>5000 bp], 7123660 duplicates)
Reads: 99221664 total, 132958 skipped (flags/unmapped)
Fragments: 50173519 total (48244853 tlen-paired, 19061 hash-paired, 9594 singletons, 373691 discordant, 1526320 orphans, 138791 too large [>5000 bp], 7198299 duplicates)