Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7BW-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7BW-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7BW-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7BW-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80484929 total, 76473 skipped (flags/unmapped)
Fragments: 40442235 total (39915682 tlen-paired, 14328 hash-paired, 7916 singletons, 9697 discordant, 494612 orphans, 13257 too large [>5000 bp], 5910217 duplicates)
Reads: 79266036 total, 66437 skipped (flags/unmapped)
Fragments: 39849266 total (39299186 tlen-paired, 14709 hash-paired, 7475 singletons, 8692 discordant, 519204 orphans, 13873 too large [>5000 bp], 5793301 duplicates)
Reads: 88199455 total, 68152 skipped (flags/unmapped)
Fragments: 44346040 total (43733791 tlen-paired, 15902 hash-paired, 8263 singletons, 8106 discordant, 579978 orphans, 13732 too large [>5000 bp], 6395172 duplicates)
Reads: 88578780 total, 110799 skipped (flags/unmapped)
Fragments: 44816076 total (43007624 tlen-paired, 14286 hash-paired, 8350 singletons, 358569 discordant, 1427247 orphans, 135713 too large [>5000 bp], 6399428 duplicates)