Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89359618 total, 71002 skipped (flags/unmapped)
Fragments: 44846021 total (44388894 tlen-paired, 20611 hash-paired, 8109 singletons, 9074 discordant, 419333 orphans, 12008 too large [>5000 bp], 6332301 duplicates)
Reads: 88670290 total, 65494 skipped (flags/unmapped)
Fragments: 44510028 total (44042004 tlen-paired, 19537 hash-paired, 7792 singletons, 7929 discordant, 432766 orphans, 12649 too large [>5000 bp], 6252159 duplicates)
Reads: 98500893 total, 112969 skipped (flags/unmapped)
Fragments: 49677058 total (48169414 tlen-paired, 21466 hash-paired, 8626 singletons, 294014 discordant, 1183538 orphans, 112986 too large [>5000 bp], 6904939 duplicates)
Reads: 97902282 total, 63667 skipped (flags/unmapped)
Fragments: 49153963 total (48631779 tlen-paired, 22180 hash-paired, 8458 singletons, 7687 discordant, 483859 orphans, 11503 too large [>5000 bp], 6876777 duplicates)