Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1VE-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VE-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VE-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VE-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89843859 total, 75022 skipped (flags/unmapped)
Fragments: 45083668 total (44630279 tlen-paired, 24007 hash-paired, 8290 singletons, 9487 discordant, 411605 orphans, 10698 too large [>5000 bp], 6759396 duplicates)
Reads: 96955523 total, 68731 skipped (flags/unmapped)
Fragments: 48667456 total (48154099 tlen-paired, 24453 hash-paired, 8992 singletons, 10084 discordant, 469828 orphans, 15350 too large [>5000 bp], 7240203 duplicates)
Reads: 96770455 total, 66779 skipped (flags/unmapped)
Fragments: 48579206 total (48068347 tlen-paired, 25378 hash-paired, 8830 singletons, 7723 discordant, 468928 orphans, 11511 too large [>5000 bp], 7224925 duplicates)
Reads: 98287199 total, 115909 skipped (flags/unmapped)
Fragments: 49568919 total (48068881 tlen-paired, 24337 hash-paired, 8989 singletons, 286055 discordant, 1180657 orphans, 111549 too large [>5000 bp], 7308936 duplicates)