Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0L8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0L8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0L8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0L8-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82146227 total, 60687 skipped (flags/unmapped)
Fragments: 41250746 total (40786296 tlen-paired, 11432 hash-paired, 7177 singletons, 6842 discordant, 438999 orphans, 15112 too large [>5000 bp], 5825971 duplicates)
Reads: 82787308 total, 66682 skipped (flags/unmapped)
Fragments: 41556861 total (41122342 tlen-paired, 11105 hash-paired, 7505 singletons, 7266 discordant, 408643 orphans, 11526 too large [>5000 bp], 5927980 duplicates)
Reads: 90834903 total, 59657 skipped (flags/unmapped)
Fragments: 45624137 total (45111414 tlen-paired, 13114 hash-paired, 7784 singletons, 6301 discordant, 485524 orphans, 10140 too large [>5000 bp], 6413147 duplicates)
Reads: 91460323 total, 106147 skipped (flags/unmapped)
Fragments: 46167620 total (44649982 tlen-paired, 11123 hash-paired, 7759 singletons, 304811 discordant, 1193945 orphans, 110320 too large [>5000 bp], 6440640 duplicates)