Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102668453 total, 83775 skipped (flags/unmapped)
Fragments: 51500250 total (51020487 tlen-paired, 25390 hash-paired, 9758 singletons, 8937 discordant, 435678 orphans, 14807 too large [>5000 bp], 7692946 duplicates)
Reads: 112196105 total, 72475 skipped (flags/unmapped)
Fragments: 56304979 total (55761710 tlen-paired, 25303 hash-paired, 10542 singletons, 7092 discordant, 500332 orphans, 12273 too large [>5000 bp], 8327395 duplicates)
Reads: 111268213 total, 79078 skipped (flags/unmapped)
Fragments: 55833696 total (55274959 tlen-paired, 27972 hash-paired, 10408 singletons, 9402 discordant, 510955 orphans, 21553 too large [>5000 bp], 8271129 duplicates)
Reads: 112782697 total, 131061 skipped (flags/unmapped)
Fragments: 56847140 total (55231737 tlen-paired, 26862 hash-paired, 10602 singletons, 307215 discordant, 1270724 orphans, 119341 too large [>5000 bp], 8355122 duplicates)