Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72898442 total, 64665 skipped (flags/unmapped)
Fragments: 36673998 total (36120385 tlen-paired, 7900 hash-paired, 7545 singletons, 7038 discordant, 531130 orphans, 12228 too large [>5000 bp], 5256140 duplicates)
Reads: 79132875 total, 54726 skipped (flags/unmapped)
Fragments: 39844980 total (39200797 tlen-paired, 8507 hash-paired, 8007 singletons, 5233 discordant, 622436 orphans, 9316 too large [>5000 bp], 5646996 duplicates)
Reads: 78598331 total, 58671 skipped (flags/unmapped)
Fragments: 39563429 total (38939477 tlen-paired, 7126 hash-paired, 7949 singletons, 6558 discordant, 602319 orphans, 11535 too large [>5000 bp], 5613302 duplicates)
Reads: 80976598 total, 95326 skipped (flags/unmapped)
Fragments: 41118281 total (39055931 tlen-paired, 7040 hash-paired, 8242 singletons, 409116 discordant, 1637952 orphans, 145452 too large [>5000 bp], 5718220 duplicates)