Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71097165 total, 59482 skipped (flags/unmapped)
Fragments: 35677248 total (35307575 tlen-paired, 20105 hash-paired, 5694 singletons, 7303 discordant, 336571 orphans, 12726 too large [>5000 bp], 4448558 duplicates)
Reads: 71704291 total, 63206 skipped (flags/unmapped)
Fragments: 35974755 total (35618115 tlen-paired, 21911 hash-paired, 6097 singletons, 7996 discordant, 320636 orphans, 9154 too large [>5000 bp], 4523804 duplicates)
Reads: 78278983 total, 96031 skipped (flags/unmapped)
Fragments: 39453331 total (38321819 tlen-paired, 21387 hash-paired, 6373 singletons, 218279 discordant, 885473 orphans, 84068 too large [>5000 bp], 4880535 duplicates)
Reads: 78404383 total, 58407 skipped (flags/unmapped)
Fragments: 39348498 total (38946147 tlen-paired, 22479 hash-paired, 6425 singletons, 6772 discordant, 366675 orphans, 11040 too large [>5000 bp], 4889828 duplicates)