Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3T4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3T4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3T4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3T4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63894056 total, 55133 skipped (flags/unmapped)
Fragments: 32230207 total (31570167 tlen-paired, 9042 hash-paired, 5657 singletons, 6821 discordant, 638520 orphans, 11343 too large [>5000 bp], 4671587 duplicates)
Reads: 64371961 total, 58765 skipped (flags/unmapped)
Fragments: 32456297 total (31823995 tlen-paired, 7767 hash-paired, 5936 singletons, 7093 discordant, 611506 orphans, 9022 too large [>5000 bp], 4729108 duplicates)
Reads: 70599186 total, 52295 skipped (flags/unmapped)
Fragments: 35626594 total (34885402 tlen-paired, 8000 hash-paired, 6124 singletons, 5823 discordant, 721245 orphans, 10536 too large [>5000 bp], 5147320 duplicates)
Reads: 72328208 total, 88526 skipped (flags/unmapped)
Fragments: 36874747 total (34530571 tlen-paired, 7307 hash-paired, 6191 singletons, 474413 discordant, 1856265 orphans, 176322 too large [>5000 bp], 5215625 duplicates)