Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2PU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2PU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2PU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2PU-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55276415 total, 47255 skipped (flags/unmapped)
Fragments: 28048803 total (27153667 tlen-paired, 4379 hash-paired, 5136 singletons, 4893 discordant, 880728 orphans, 8709 too large [>5000 bp], 4065400 duplicates)
Reads: 55743727 total, 52289 skipped (flags/unmapped)
Fragments: 28264314 total (27404363 tlen-paired, 3809 hash-paired, 5367 singletons, 5306 discordant, 845469 orphans, 6823 too large [>5000 bp], 4142019 duplicates)
Reads: 61049780 total, 46994 skipped (flags/unmapped)
Fragments: 30992597 total (29986868 tlen-paired, 4056 hash-paired, 5848 singletons, 4623 discordant, 991202 orphans, 7321 too large [>5000 bp], 4451929 duplicates)
Reads: 63787321 total, 84610 skipped (flags/unmapped)
Fragments: 32917320 total (29602006 tlen-paired, 2803 hash-paired, 5879 singletons, 673314 discordant, 2633318 orphans, 253634 too large [>5000 bp], 4546583 duplicates)