Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_P6B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
The index file is older than the data file: 869_P6B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_P6B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_P6B-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69589553 total, 61524 skipped (flags/unmapped)
Fragments: 34922393 total (34561472 tlen-paired, 21180 hash-paired, 6239 singletons, 6556 discordant, 326946 orphans, 8214 too large [>5000 bp], 4358370 duplicates)
Reads: 74959561 total, 58406 skipped (flags/unmapped)
Fragments: 37626484 total (37217146 tlen-paired, 21460 hash-paired, 6782 singletons, 7071 discordant, 374025 orphans, 14497 too large [>5000 bp], 4662383 duplicates)
Reads: 75185827 total, 52125 skipped (flags/unmapped)
Fragments: 37748685 total (37338569 tlen-paired, 21536 hash-paired, 6701 singletons, 5398 discordant, 376481 orphans, 9757 too large [>5000 bp], 4677688 duplicates)
Reads: 76599133 total, 90939 skipped (flags/unmapped)
Fragments: 38643913 total (37429524 tlen-paired, 20612 hash-paired, 6779 singletons, 234625 discordant, 952373 orphans, 89760 too large [>5000 bp], 4729332 duplicates)