Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93733575 total, 69843 skipped (flags/unmapped)
Fragments: 47045031 total (46554120 tlen-paired, 23201 hash-paired, 9465 singletons, 9246 discordant, 448999 orphans, 16067 too large [>5000 bp], 7277365 duplicates)
Reads: 95082635 total, 76999 skipped (flags/unmapped)
Fragments: 47706461 total (47241634 tlen-paired, 25513 hash-paired, 9736 singletons, 9624 discordant, 419954 orphans, 11202 too large [>5000 bp], 7433289 duplicates)
Reads: 103215465 total, 72709 skipped (flags/unmapped)
Fragments: 51804771 total (51276792 tlen-paired, 27107 hash-paired, 10523 singletons, 7692 discordant, 482657 orphans, 13197 too large [>5000 bp], 7978157 duplicates)
Reads: 103041755 total, 121292 skipped (flags/unmapped)
Fragments: 51944148 total (50435038 tlen-paired, 25837 hash-paired, 10499 singletons, 289606 discordant, 1183168 orphans, 112917 too large [>5000 bp], 7981954 duplicates)