Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_77Q-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_77Q-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1136_77Q-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_77Q-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60701428 total, 58553 skipped (flags/unmapped)
Fragments: 30569046 total (30046064 tlen-paired, 5911 hash-paired, 6290 singletons, 5846 discordant, 504935 orphans, 8004 too large [>5000 bp], 4301565 duplicates)
Reads: 65574581 total, 53372 skipped (flags/unmapped)
Fragments: 33043755 total (32442104 tlen-paired, 6190 hash-paired, 6741 singletons, 6298 discordant, 582422 orphans, 11431 too large [>5000 bp], 4604600 duplicates)
Reads: 66205224 total, 51225 skipped (flags/unmapped)
Fragments: 33371749 total (32755495 tlen-paired, 6250 hash-paired, 6488 singletons, 4811 discordant, 598705 orphans, 7847 too large [>5000 bp], 4610875 duplicates)
Reads: 68014021 total, 95680 skipped (flags/unmapped)
Fragments: 34605493 total (32622799 tlen-paired, 6380 hash-paired, 6870 singletons, 395713 discordant, 1573731 orphans, 143978 too large [>5000 bp], 4688290 duplicates)