Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82125145 total, 68871 skipped (flags/unmapped)
Fragments: 41187332 total (40814377 tlen-paired, 21793 hash-paired, 7925 singletons, 7888 discordant, 335349 orphans, 12442 too large [>5000 bp], 5591655 duplicates)
Reads: 88697648 total, 66013 skipped (flags/unmapped)
Fragments: 44497734 total (44071220 tlen-paired, 23002 hash-paired, 8194 singletons, 8321 discordant, 386997 orphans, 15679 too large [>5000 bp], 5989182 duplicates)
Reads: 89126650 total, 61973 skipped (flags/unmapped)
Fragments: 44718682 total (44297489 tlen-paired, 22627 hash-paired, 8318 singletons, 6157 discordant, 384091 orphans, 9861 too large [>5000 bp], 5996110 duplicates)
Reads: 89211073 total, 107987 skipped (flags/unmapped)
Fragments: 44944885 total (43726912 tlen-paired, 22613 hash-paired, 8491 singletons, 229650 discordant, 957219 orphans, 89513 too large [>5000 bp], 6007734 duplicates)