Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BON7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BON7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BON7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BON7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75672743 total, 67624 skipped (flags/unmapped)
Fragments: 38212793 total (37362224 tlen-paired, 4984 hash-paired, 4724 singletons, 7500 discordant, 833361 orphans, 8809 too large [>5000 bp], 9121747 duplicates)
Reads: 83140085 total, 59696 skipped (flags/unmapped)
Fragments: 42006650 total (41032654 tlen-paired, 5458 hash-paired, 5035 singletons, 7705 discordant, 955798 orphans, 13961 too large [>5000 bp], 9967812 duplicates)
Reads: 82705756 total, 59871 skipped (flags/unmapped)
Fragments: 41790999 total (40823184 tlen-paired, 5090 hash-paired, 4939 singletons, 5600 discordant, 952186 orphans, 10506 too large [>5000 bp], 9930230 duplicates)
Reads: 88225140 total, 108271 skipped (flags/unmapped)
Fragments: 45110742 total (41829498 tlen-paired, 4187 hash-paired, 5275 singletons, 657896 discordant, 2613886 orphans, 257273 too large [>5000 bp], 10369268 duplicates)