Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3K7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3K7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3K7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3K7-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 104639522 total, 86156 skipped (flags/unmapped)
Fragments: 52489220 total (52017943 tlen-paired, 15337 hash-paired, 6892 singletons, 11396 discordant, 437652 orphans, 9735 too large [>5000 bp], 13392268 duplicates)
Reads: 114248440 total, 75997 skipped (flags/unmapped)
Fragments: 57323213 total (56799896 tlen-paired, 17962 hash-paired, 7495 singletons, 8158 discordant, 489702 orphans, 11607 too large [>5000 bp], 14673454 duplicates)
Reads: 115443218 total, 82123 skipped (flags/unmapped)
Fragments: 57920573 total (57373214 tlen-paired, 18642 hash-paired, 7420 singletons, 11706 discordant, 509591 orphans, 18480 too large [>5000 bp], 14729922 duplicates)
Reads: 117850933 total, 139121 skipped (flags/unmapped)
Fragments: 59361565 total (57793570 tlen-paired, 16966 hash-paired, 7685 singletons, 300629 discordant, 1242715 orphans, 119541 too large [>5000 bp], 14991444 duplicates)