Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4SO-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4SO-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4SO-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4SO-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82881951 total, 69572 skipped (flags/unmapped)
Fragments: 41604419 total (41176008 tlen-paired, 9180 hash-paired, 4927 singletons, 7716 discordant, 406588 orphans, 7528 too large [>5000 bp], 9507907 duplicates)
Reads: 91541013 total, 62602 skipped (flags/unmapped)
Fragments: 45966871 total (45471820 tlen-paired, 8160 hash-paired, 5330 singletons, 7684 discordant, 473877 orphans, 11938 too large [>5000 bp], 10446379 duplicates)
Reads: 91156774 total, 59296 skipped (flags/unmapped)
Fragments: 45778650 total (45286623 tlen-paired, 7992 hash-paired, 5432 singletons, 5753 discordant, 472850 orphans, 9230 too large [>5000 bp], 10442980 duplicates)
Reads: 93928765 total, 108248 skipped (flags/unmapped)
Fragments: 47406171 total (45877485 tlen-paired, 8001 hash-paired, 5520 singletons, 299002 discordant, 1216163 orphans, 114929 too large [>5000 bp], 10682190 duplicates)