Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_02S-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02S-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02S-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02S-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60084473 total, 53004 skipped (flags/unmapped)
Fragments: 30167621 total (29839409 tlen-paired, 5198 hash-paired, 3613 singletons, 6681 discordant, 312720 orphans, 6280 too large [>5000 bp], 5629913 duplicates)
Reads: 66342926 total, 49891 skipped (flags/unmapped)
Fragments: 33318598 total (32938917 tlen-paired, 6336 hash-paired, 3875 singletons, 7002 discordant, 362468 orphans, 11091 too large [>5000 bp], 6196137 duplicates)
Reads: 66291781 total, 47689 skipped (flags/unmapped)
Fragments: 33296858 total (32922228 tlen-paired, 5528 hash-paired, 3977 singletons, 4972 discordant, 360153 orphans, 7253 too large [>5000 bp], 6215577 duplicates)
Reads: 68320980 total, 83151 skipped (flags/unmapped)
Fragments: 34492884 total (33335314 tlen-paired, 4554 hash-paired, 4216 singletons, 227335 discordant, 921465 orphans, 88871 too large [>5000 bp], 6334452 duplicates)