Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5FD-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5FD-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5FD-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5FD-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86524799 total, 64322 skipped (flags/unmapped)
Fragments: 43429193 total (42974781 tlen-paired, 12504 hash-paired, 5117 singletons, 8143 discordant, 428648 orphans, 17928 too large [>5000 bp], 9650876 duplicates)
Reads: 94932636 total, 65299 skipped (flags/unmapped)
Fragments: 47649652 total (47177806 tlen-paired, 12662 hash-paired, 5624 singletons, 6925 discordant, 446635 orphans, 10146 too large [>5000 bp], 10615171 duplicates)
Reads: 85533731 total, 71642 skipped (flags/unmapped)
Fragments: 42922502 total (42500995 tlen-paired, 12643 hash-paired, 5050 singletons, 8957 discordant, 394857 orphans, 8496 too large [>5000 bp], 9600012 duplicates)
Reads: 96549490 total, 112205 skipped (flags/unmapped)
Fragments: 48666818 total (47258774 tlen-paired, 13223 hash-paired, 5723 singletons, 276900 discordant, 1112198 orphans, 110785 too large [>5000 bp], 10745653 duplicates)