Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4N-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4N-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4N-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4N-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72092134 total, 52161 skipped (flags/unmapped)
Fragments: 36264421 total (35745699 tlen-paired, 6406 hash-paired, 4815 singletons, 5249 discordant, 502252 orphans, 9099 too large [>5000 bp], 7441007 duplicates)
Reads: 66344659 total, 60027 skipped (flags/unmapped)
Fragments: 33356561 total (32894693 tlen-paired, 6954 hash-paired, 4546 singletons, 6768 discordant, 443600 orphans, 9828 too large [>5000 bp], 6865261 duplicates)
Reads: 71849620 total, 51825 skipped (flags/unmapped)
Fragments: 36138350 total (35613670 tlen-paired, 5993 hash-paired, 4750 singletons, 6686 discordant, 507251 orphans, 16548 too large [>5000 bp], 7390263 duplicates)
Reads: 75551475 total, 86764 skipped (flags/unmapped)
Fragments: 38272429 total (36593114 tlen-paired, 6029 hash-paired, 5045 singletons, 333549 discordant, 1334692 orphans, 129795 too large [>5000 bp], 7708540 duplicates)