Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_24I-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_24I-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai[W::hts_idx_load3] 
The index file is older than the data file: 1136_24I-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_24I-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70211052 total, 52061 skipped (flags/unmapped)
Fragments: 35248263 total (34869620 tlen-paired, 8532 hash-paired, 4414 singletons, 6196 discordant, 359501 orphans, 13190 too large [>5000 bp], 7117468 duplicates)
Reads: 69726101 total, 60148 skipped (flags/unmapped)
Fragments: 34992404 total (34642385 tlen-paired, 8061 hash-paired, 4445 singletons, 6991 discordant, 330522 orphans, 8056 too large [>5000 bp], 7101158 duplicates)
Reads: 77109250 total, 51436 skipped (flags/unmapped)
Fragments: 38713665 total (38317602 tlen-paired, 7598 hash-paired, 4694 singletons, 5313 discordant, 378458 orphans, 6818 too large [>5000 bp], 7825004 duplicates)
Reads: 78606359 total, 96757 skipped (flags/unmapped)
Fragments: 39638537 total (38438153 tlen-paired, 8518 hash-paired, 4836 singletons, 238390 discordant, 948640 orphans, 93002 too large [>5000 bp], 7935725 duplicates)