Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_35Z-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_35Z-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_35Z-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_35Z-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90360855 total, 80277 skipped (flags/unmapped)
Fragments: 45382198 total (44859014 tlen-paired, 9211 hash-paired, 5954 singletons, 9975 discordant, 498044 orphans, 10090 too large [>5000 bp], 11017914 duplicates)
Reads: 99337959 total, 73007 skipped (flags/unmapped)
Fragments: 49906415 total (49309687 tlen-paired, 8534 hash-paired, 6404 singletons, 9580 discordant, 572210 orphans, 15368 too large [>5000 bp], 12062888 duplicates)
Reads: 99723661 total, 67063 skipped (flags/unmapped)
Fragments: 50105304 total (49516124 tlen-paired, 9441 hash-paired, 6467 singletons, 6991 discordant, 566281 orphans, 9369 too large [>5000 bp], 12137933 duplicates)
Reads: 102631321 total, 119971 skipped (flags/unmapped)
Fragments: 51853298 total (50003367 tlen-paired, 8189 hash-paired, 6816 singletons, 362708 discordant, 1472218 orphans, 141894 too large [>5000 bp], 12399247 duplicates)