Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_04F-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_04F-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_04F-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_04F-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72507296 total, 56231 skipped (flags/unmapped)
Fragments: 36547288 total (35860848 tlen-paired, 6146 hash-paired, 4474 singletons, 6711 discordant, 669109 orphans, 15036 too large [>5000 bp], 8410821 duplicates)
Reads: 72132894 total, 63719 skipped (flags/unmapped)
Fragments: 36340649 total (35698801 tlen-paired, 4179 hash-paired, 4347 singletons, 7512 discordant, 625810 orphans, 9017 too large [>5000 bp], 8405843 duplicates)
Reads: 79569964 total, 54600 skipped (flags/unmapped)
Fragments: 40110123 total (39378147 tlen-paired, 4499 hash-paired, 4772 singletons, 5635 discordant, 717070 orphans, 8480 too large [>5000 bp], 9226655 duplicates)
Reads: 82606438 total, 101360 skipped (flags/unmapped)
Fragments: 42006219 total (39635308 tlen-paired, 5549 hash-paired, 4995 singletons, 479552 discordant, 1880815 orphans, 189225 too large [>5000 bp], 9466497 duplicates)