Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4HC-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4HC-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.baiCount mode: frac

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4HC-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4HC-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88093123 total, 77695 skipped (flags/unmapped)
Fragments: 44189522 total (43781817 tlen-paired, 15149 hash-paired, 5891 singletons, 10770 discordant, 375895 orphans, 9085 too large [>5000 bp], 9639695 duplicates)
Reads: 88983877 total, 68104 skipped (flags/unmapped)
Fragments: 44642978 total (44215029 tlen-paired, 15199 hash-paired, 5867 singletons, 9779 discordant, 397104 orphans, 16394 too large [>5000 bp], 9702866 duplicates)
Reads: 97439653 total, 66641 skipped (flags/unmapped)
Fragments: 48889490 total (48440196 tlen-paired, 16152 hash-paired, 6374 singletons, 8402 discordant, 418366 orphans, 9386 too large [>5000 bp], 10629409 duplicates)
Reads: 99385755 total, 124614 skipped (flags/unmapped)
Fragments: 50041890 total (48750534 tlen-paired, 16154 hash-paired, 6427 singletons, 252109 discordant, 1016666 orphans, 100227 too large [>5000 bp], 10802610 duplicates)