Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_CWN-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_CWN-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_CWN-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_CWN-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86545696 total, 75219 skipped (flags/unmapped)
Fragments: 43485538 total (42947109 tlen-paired, 6382 hash-paired, 5921 singletons, 9700 discordant, 516426 orphans, 10874 too large [>5000 bp], 10105253 duplicates)
Reads: 94919428 total, 65787 skipped (flags/unmapped)
Fragments: 47711164 total (47089934 tlen-paired, 8760 hash-paired, 6135 singletons, 9817 discordant, 596518 orphans, 16983 too large [>5000 bp], 11038318 duplicates)
Reads: 95030863 total, 64576 skipped (flags/unmapped)
Fragments: 47767826 total (47163851 tlen-paired, 6514 hash-paired, 6186 singletons, 7386 discordant, 583889 orphans, 10355 too large [>5000 bp], 11087904 duplicates)
Reads: 98524129 total, 110811 skipped (flags/unmapped)
Fragments: 49824082 total (47906529 tlen-paired, 7783 hash-paired, 6521 singletons, 378442 discordant, 1524807 orphans, 148241 too large [>5000 bp], 11351112 duplicates)