Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_R8U-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_R8U-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_R8U-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_R8U-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 101461257 total, 85571 skipped (flags/unmapped)
Fragments: 50924420 total (50401689 tlen-paired, 10761 hash-paired, 6709 singletons, 11566 discordant, 493695 orphans, 13625 too large [>5000 bp], 12500294 duplicates)
Reads: 102060229 total, 75513 skipped (flags/unmapped)
Fragments: 51242680 total (50697224 tlen-paired, 11687 hash-paired, 6623 singletons, 9753 discordant, 517393 orphans, 11686 too large [>5000 bp], 12501266 duplicates)
Reads: 111446347 total, 76200 skipped (flags/unmapped)
Fragments: 55958368 total (55368139 tlen-paired, 10760 hash-paired, 7263 singletons, 8982 discordant, 563224 orphans, 11949 too large [>5000 bp], 13658870 duplicates)
Reads: 114701162 total, 129850 skipped (flags/unmapped)
Fragments: 57850831 total (56082963 tlen-paired, 10284 hash-paired, 7596 singletons, 352782 discordant, 1397206 orphans, 137226 too large [>5000 bp], 13983830 duplicates)