Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_25Q-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_25Q-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_25Q-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_25Q-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82191453 total, 61335 skipped (flags/unmapped)
Fragments: 41252285 total (40824498 tlen-paired, 13804 hash-paired, 5421 singletons, 8671 discordant, 399891 orphans, 15430 too large [>5000 bp], 8940563 duplicates)
Reads: 81934642 total, 71078 skipped (flags/unmapped)
Fragments: 41111034 total (40712010 tlen-paired, 13071 hash-paired, 5488 singletons, 9859 discordant, 370606 orphans, 8795 too large [>5000 bp], 8956834 duplicates)
Reads: 90330903 total, 61471 skipped (flags/unmapped)
Fragments: 45336470 total (44895246 tlen-paired, 12609 hash-paired, 6011 singletons, 7249 discordant, 415355 orphans, 8929 too large [>5000 bp], 9813834 duplicates)
Reads: 92756869 total, 108375 skipped (flags/unmapped)
Fragments: 46736044 total (45435958 tlen-paired, 14527 hash-paired, 6180 singletons, 256099 discordant, 1023280 orphans, 102933 too large [>5000 bp], 10078711 duplicates)