Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3T8-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3T8-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3T8-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3T8-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66288196 total, 56997 skipped (flags/unmapped)
Fragments: 33243508 total (32955269 tlen-paired, 10274 hash-paired, 4142 singletons, 7122 discordant, 266701 orphans, 7513 too large [>5000 bp], 6290903 duplicates)
Reads: 72433557 total, 47290 skipped (flags/unmapped)
Fragments: 36336590 total (36020946 tlen-paired, 9984 hash-paired, 4111 singletons, 5195 discordant, 296354 orphans, 6776 too large [>5000 bp], 6868286 duplicates)
Reads: 72993733 total, 51634 skipped (flags/unmapped)
Fragments: 36612283 total (36280056 tlen-paired, 10803 hash-paired, 4319 singletons, 7111 discordant, 309994 orphans, 15923 too large [>5000 bp], 6892244 duplicates)
Reads: 74453474 total, 86843 skipped (flags/unmapped)
Fragments: 37487061 total (36544050 tlen-paired, 10821 hash-paired, 4314 singletons, 180239 discordant, 747637 orphans, 72230 too large [>5000 bp], 7024579 duplicates)