Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_0W-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1136_0W-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0W-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0W-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 104536529 total, 87981 skipped (flags/unmapped)
Fragments: 52503862 total (51894877 tlen-paired, 10231 hash-paired, 6737 singletons, 11576 discordant, 580441 orphans, 14001 too large [>5000 bp], 13361267 duplicates)
Reads: 114327650 total, 73469 skipped (flags/unmapped)
Fragments: 57448201 total (56767393 tlen-paired, 8920 hash-paired, 7374 singletons, 8443 discordant, 656071 orphans, 10612 too large [>5000 bp], 14578784 duplicates)
Reads: 115441928 total, 77797 skipped (flags/unmapped)
Fragments: 58001099 total (57314896 tlen-paired, 9271 hash-paired, 7550 singletons, 11211 discordant, 658171 orphans, 13827 too large [>5000 bp], 14660777 duplicates)
Reads: 118461491 total, 130606 skipped (flags/unmapped)
Fragments: 59861535 total (57711684 tlen-paired, 10279 hash-paired, 7780 singletons, 419873 discordant, 1711919 orphans, 163757 too large [>5000 bp], 14966243 duplicates)