Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_NMM-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_NMM-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_NMM-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_NMM-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 49283199 total, 45045 skipped (flags/unmapped)
Fragments: 24789043 total (24428565 tlen-paired, 3965 hash-paired, 3223 singletons, 5503 discordant, 347787 orphans, 5539 too large [>5000 bp], 5589587 duplicates)
Reads: 54345715 total, 39121 skipped (flags/unmapped)
Fragments: 27347191 total (26927450 tlen-paired, 3245 hash-paired, 3420 singletons, 5308 discordant, 407768 orphans, 11700 too large [>5000 bp], 6100815 duplicates)
Reads: 53514474 total, 37469 skipped (flags/unmapped)
Fragments: 26932256 total (26526066 tlen-paired, 3331 hash-paired, 3586 singletons, 3828 discordant, 395445 orphans, 5762 too large [>5000 bp], 6007742 duplicates)
Reads: 56249194 total, 68322 skipped (flags/unmapped)
Fragments: 28517246 total (27193398 tlen-paired, 3900 hash-paired, 3492 singletons, 261822 discordant, 1054634 orphans, 102253 too large [>5000 bp], 6265330 duplicates)