Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7FA-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7FA-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7FA-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7FA-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 52115498 total, 50735 skipped (flags/unmapped)
Fragments: 26155281 total (25880283 tlen-paired, 7321 hash-paired, 2964 singletons, 4980 discordant, 259733 orphans, 8449 too large [>5000 bp], 4411191 duplicates)
Reads: 52554591 total, 38999 skipped (flags/unmapped)
Fragments: 26392167 total (26094984 tlen-paired, 5658 hash-paired, 2819 singletons, 4583 discordant, 284123 orphans, 9100 too large [>5000 bp], 4423663 duplicates)
Reads: 57518107 total, 39840 skipped (flags/unmapped)
Fragments: 28883525 total (28573092 tlen-paired, 5952 hash-paired, 3181 singletons, 3784 discordant, 297516 orphans, 5957 too large [>5000 bp], 4841847 duplicates)
Reads: 58998629 total, 71630 skipped (flags/unmapped)
Fragments: 29765461 total (28815229 tlen-paired, 6115 hash-paired, 3288 singletons, 189478 discordant, 751351 orphans, 75358 too large [>5000 bp], 4937763 duplicates)