Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7EX-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7EX-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7EX-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7EX-N1-BDNA-1_A23H3W5LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 105866023 total, 102582 skipped (flags/unmapped)
Fragments: 53126665 total (52586015 tlen-paired, 16230 hash-paired, 6889 singletons, 13263 discordant, 504268 orphans, 10634 too large [>5000 bp], 13303308 duplicates)
Reads: 117238423 total, 83102 skipped (flags/unmapped)
Fragments: 58850508 total (58252512 tlen-paired, 15523 hash-paired, 7451 singletons, 9614 discordant, 565408 orphans, 13582 too large [>5000 bp], 14742828 duplicates)
Reads: 117226807 total, 88352 skipped (flags/unmapped)
Fragments: 58844293 total (58234045 tlen-paired, 15543 hash-paired, 7247 singletons, 12872 discordant, 574586 orphans, 15851 too large [>5000 bp], 14659813 duplicates)
Reads: 119729879 total, 154224 skipped (flags/unmapped)
Fragments: 60371733 total (58567782 tlen-paired, 16446 hash-paired, 7567 singletons, 344684 discordant, 1435254 orphans, 137505 too large [>5000 bp], 14918950 duplicates)