Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_43A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_43A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_43A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_43A-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79094573 total, 57388 skipped (flags/unmapped)
Fragments: 39713598 total (39279089 tlen-paired, 2459 hash-paired, 400 singletons, 16311 discordant, 415339 orphans, 12864 too large [>5000 bp], 14478858 duplicates)
Reads: 83519815 total, 46401 skipped (flags/unmapped)
Fragments: 41940182 total (41501684 tlen-paired, 2076 hash-paired, 491 singletons, 10936 discordant, 424995 orphans, 9268 too large [>5000 bp], 14879112 duplicates)
Reads: 92952191 total, 84757 skipped (flags/unmapped)
Fragments: 46862063 total (45525894 tlen-paired, 2558 hash-paired, 476 singletons, 259449 discordant, 1073686 orphans, 108735 too large [>5000 bp], 17103485 duplicates)
Reads: 91703899 total, 50332 skipped (flags/unmapped)
Fragments: 46055299 total (45541948 tlen-paired, 2980 hash-paired, 463 singletons, 16988 discordant, 492920 orphans, 18176 too large [>5000 bp], 16797899 duplicates)