Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1RI-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RI-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RI-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1RI-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75834933 total, 53846 skipped (flags/unmapped)
Fragments: 38022303 total (37718815 tlen-paired, 3523 hash-paired, 286 singletons, 14856 discordant, 284823 orphans, 10795 too large [>5000 bp], 13832411 duplicates)
Reads: 80764616 total, 46163 skipped (flags/unmapped)
Fragments: 40495995 total (40189831 tlen-paired, 2599 hash-paired, 426 singletons, 9818 discordant, 293321 orphans, 10105 too large [>5000 bp], 14336385 duplicates)
Reads: 88875450 total, 85426 skipped (flags/unmapped)
Fragments: 44671128 total (43824192 tlen-paired, 3681 hash-paired, 374 singletons, 161493 discordant, 681388 orphans, 64765 too large [>5000 bp], 16246436 duplicates)
Reads: 88099311 total, 49338 skipped (flags/unmapped)
Fragments: 44180722 total (43806212 tlen-paired, 4649 hash-paired, 347 singletons, 15764 discordant, 353750 orphans, 21313 too large [>5000 bp], 16067589 duplicates)