Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_37O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_37O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_37O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_37O-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62400661 total, 47997 skipped (flags/unmapped)
Fragments: 31367863 total (30951364 tlen-paired, 2761 hash-paired, 311 singletons, 11436 discordant, 401991 orphans, 9620 too large [>5000 bp], 11662827 duplicates)
Reads: 65901985 total, 41725 skipped (flags/unmapped)
Fragments: 33129902 total (32701059 tlen-paired, 2559 hash-paired, 405 singletons, 7878 discordant, 418001 orphans, 9431 too large [>5000 bp], 11943336 duplicates)
Reads: 72557424 total, 43858 skipped (flags/unmapped)
Fragments: 36482211 total (35978016 tlen-paired, 2984 hash-paired, 290 singletons, 11991 discordant, 488930 orphans, 19182 too large [>5000 bp], 13540318 duplicates)
Reads: 74043659 total, 73682 skipped (flags/unmapped)
Fragments: 37428133 total (36035501 tlen-paired, 2640 hash-paired, 397 singletons, 275787 discordant, 1113808 orphans, 113958 too large [>5000 bp], 13822388 duplicates)