Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_355-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_355-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_355-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_355-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63748713 total, 46942 skipped (flags/unmapped)
Fragments: 32026639 total (31643788 tlen-paired, 2335 hash-paired, 384 singletons, 11615 discordant, 368517 orphans, 8697 too large [>5000 bp], 11585198 duplicates)
Reads: 67738803 total, 41462 skipped (flags/unmapped)
Fragments: 34036200 total (33620424 tlen-paired, 1898 hash-paired, 344 singletons, 9837 discordant, 403697 orphans, 14491 too large [>5000 bp], 12341546 duplicates)
Reads: 68380087 total, 39050 skipped (flags/unmapped)
Fragments: 34358244 total (33956147 tlen-paired, 1812 hash-paired, 435 singletons, 8140 discordant, 391710 orphans, 8347 too large [>5000 bp], 12070144 duplicates)
Reads: 75561568 total, 72023 skipped (flags/unmapped)
Fragments: 38136387 total (36900842 tlen-paired, 1629 hash-paired, 421 singletons, 249569 discordant, 983926 orphans, 100559 too large [>5000 bp], 13733512 duplicates)