Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_MHV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_MHV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_MHV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_MHV-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79245064 total, 59510 skipped (flags/unmapped)
Fragments: 39675283 total (39471666 tlen-paired, 4430 hash-paired, 352 singletons, 8507 discordant, 190328 orphans, 12834 too large [>5000 bp], 13632434 duplicates)
Reads: 87534974 total, 47632 skipped (flags/unmapped)
Fragments: 43843344 total (43616834 tlen-paired, 2858 hash-paired, 520 singletons, 6600 discordant, 216532 orphans, 8853 too large [>5000 bp], 14763378 duplicates)
Reads: 93498455 total, 51454 skipped (flags/unmapped)
Fragments: 46828165 total (46572429 tlen-paired, 3676 hash-paired, 371 singletons, 8581 discordant, 243108 orphans, 17075 too large [>5000 bp], 16009532 duplicates)
Reads: 93296038 total, 82524 skipped (flags/unmapped)
Fragments: 46804870 total (46197086 tlen-paired, 3810 hash-paired, 370 singletons, 117564 discordant, 486040 orphans, 45092 too large [>5000 bp], 16018225 duplicates)