Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BI1W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BI1W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BI1W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BI1W-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93841439 total, 57112 skipped (flags/unmapped)
Fragments: 47146812 total (46598168 tlen-paired, 3780 hash-paired, 507 singletons, 9981 discordant, 534376 orphans, 12793 too large [>5000 bp], 17815983 duplicates)
Reads: 87459674 total, 68015 skipped (flags/unmapped)
Fragments: 43935737 total (43414207 tlen-paired, 3882 hash-paired, 470 singletons, 13879 discordant, 503299 orphans, 11977 too large [>5000 bp], 16891677 duplicates)
Reads: 102479417 total, 56774 skipped (flags/unmapped)
Fragments: 51497505 total (50856390 tlen-paired, 5944 hash-paired, 469 singletons, 14248 discordant, 620454 orphans, 24278 too large [>5000 bp], 19856509 duplicates)
Reads: 104426314 total, 95346 skipped (flags/unmapped)
Fragments: 52731902 total (50961508 tlen-paired, 4708 hash-paired, 494 singletons, 349908 discordant, 1415284 orphans, 141471 too large [>5000 bp], 20276280 duplicates)