Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_80V-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_80V-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_80V-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_80V-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66473706 total, 46047 skipped (flags/unmapped)
Fragments: 33356761 total (33041568 tlen-paired, 2810 hash-paired, 343 singletons, 7700 discordant, 304340 orphans, 9410 too large [>5000 bp], 11419172 duplicates)
Reads: 71577002 total, 40300 skipped (flags/unmapped)
Fragments: 35922713 total (35587675 tlen-paired, 2490 hash-paired, 379 singletons, 5354 discordant, 326815 orphans, 9235 too large [>5000 bp], 11918009 duplicates)
Reads: 77815834 total, 43290 skipped (flags/unmapped)
Fragments: 39058488 total (38672414 tlen-paired, 2585 hash-paired, 309 singletons, 7871 discordant, 375309 orphans, 15593 too large [>5000 bp], 13325367 duplicates)
Reads: 79005916 total, 75102 skipped (flags/unmapped)
Fragments: 39810067 total (38727129 tlen-paired, 3150 hash-paired, 351 singletons, 215112 discordant, 864325 orphans, 87678 too large [>5000 bp], 13557092 duplicates)