Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_M7J-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_M7J-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_M7J-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_M7J-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76514264 total, 51078 skipped (flags/unmapped)
Fragments: 38347516 total (38086990 tlen-paired, 2977 hash-paired, 321 singletons, 9953 discordant, 247275 orphans, 7875 too large [>5000 bp], 13507171 duplicates)
Reads: 81845713 total, 44838 skipped (flags/unmapped)
Fragments: 41021955 total (40752615 tlen-paired, 2094 hash-paired, 384 singletons, 6749 discordant, 260113 orphans, 8731 too large [>5000 bp], 14033423 duplicates)
Reads: 89674884 total, 48360 skipped (flags/unmapped)
Fragments: 44945379 total (44628413 tlen-paired, 4718 hash-paired, 311 singletons, 9716 discordant, 302221 orphans, 19149 too large [>5000 bp], 15815499 duplicates)
Reads: 90302244 total, 77115 skipped (flags/unmapped)
Fragments: 45368250 total (44567016 tlen-paired, 2593 hash-paired, 328 singletons, 155616 discordant, 642697 orphans, 65827 too large [>5000 bp], 15998129 duplicates)