Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2IL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2IL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2IL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2IL-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 50341908 total, 36619 skipped (flags/unmapped)
Fragments: 25325075 total (24958165 tlen-paired, 1909 hash-paired, 279 singletons, 7796 discordant, 356926 orphans, 6172 too large [>5000 bp], 8782295 duplicates)
Reads: 54101104 total, 34371 skipped (flags/unmapped)
Fragments: 27218724 total (26801279 tlen-paired, 3017 hash-paired, 255 singletons, 7333 discordant, 406840 orphans, 18190 too large [>5000 bp], 9421102 duplicates)
Reads: 54409133 total, 33132 skipped (flags/unmapped)
Fragments: 27375441 total (26980696 tlen-paired, 1747 hash-paired, 325 singletons, 5777 discordant, 386896 orphans, 6170 too large [>5000 bp], 9240083 duplicates)
Reads: 60496799 total, 63210 skipped (flags/unmapped)
Fragments: 30618793 total (29343617 tlen-paired, 2523 hash-paired, 298 singletons, 260286 discordant, 1012069 orphans, 104185 too large [>5000 bp], 10511195 duplicates)