Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BA2K-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA2K-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA2K-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA2K-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75305333 total, 56835 skipped (flags/unmapped)
Fragments: 37817207 total (37396656 tlen-paired, 2659 hash-paired, 413 singletons, 9974 discordant, 407505 orphans, 11001 too large [>5000 bp], 14023092 duplicates)
Reads: 81016688 total, 53003 skipped (flags/unmapped)
Fragments: 40689913 total (40236692 tlen-paired, 4248 hash-paired, 423 singletons, 7632 discordant, 440918 orphans, 12600 too large [>5000 bp], 14694796 duplicates)
Reads: 87529636 total, 50760 skipped (flags/unmapped)
Fragments: 43966977 total (43461148 tlen-paired, 3652 hash-paired, 371 singletons, 10039 discordant, 491767 orphans, 18530 too large [>5000 bp], 16328574 duplicates)
Reads: 89470999 total, 85603 skipped (flags/unmapped)
Fragments: 45156560 total (43701637 tlen-paired, 3669 hash-paired, 463 singletons, 289336 discordant, 1161455 orphans, 117097 too large [>5000 bp], 16716073 duplicates)