Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0G3-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0G3-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0G3-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0G3-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82029061 total, 45750 skipped (flags/unmapped)
Fragments: 41113397 total (40834005 tlen-paired, 4494 hash-paired, 335 singletons, 10255 discordant, 264308 orphans, 10580 too large [>5000 bp], 13502380 duplicates)
Reads: 82722567 total, 42546 skipped (flags/unmapped)
Fragments: 41455486 total (41193460 tlen-paired, 2707 hash-paired, 427 singletons, 8742 discordant, 250150 orphans, 9813 too large [>5000 bp], 13207719 duplicates)
Reads: 77025378 total, 52645 skipped (flags/unmapped)
Fragments: 38596986 total (38339873 tlen-paired, 4561 hash-paired, 395 singletons, 12153 discordant, 240004 orphans, 9580 too large [>5000 bp], 12620775 duplicates)
Reads: 90289033 total, 74410 skipped (flags/unmapped)
Fragments: 45334527 total (44624565 tlen-paired, 2786 hash-paired, 386 singletons, 139389 discordant, 567401 orphans, 56678 too large [>5000 bp], 14885651 duplicates)