Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4KO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4KO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4KO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4KO-N1-BDNA-1_A23KFG7LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 106690048 total, 69985 skipped (flags/unmapped)
Fragments: 53464377 total (53107049 tlen-paired, 3516 hash-paired, 560 singletons, 20313 discordant, 332939 orphans, 12404 too large [>5000 bp], 20103886 duplicates)
Reads: 113228124 total, 61231 skipped (flags/unmapped)
Fragments: 56742996 total (56381912 tlen-paired, 3289 hash-paired, 605 singletons, 13720 discordant, 343470 orphans, 12488 too large [>5000 bp], 20949009 duplicates)
Reads: 124716634 total, 107846 skipped (flags/unmapped)
Fragments: 62609682 total (61676320 tlen-paired, 3848 hash-paired, 502 singletons, 174574 discordant, 754438 orphans, 72182 too large [>5000 bp], 23709775 duplicates)
Reads: 123674650 total, 64713 skipped (flags/unmapped)
Fragments: 61986371 total (61554977 tlen-paired, 5476 hash-paired, 446 singletons, 19481 discordant, 405991 orphans, 21816 too large [>5000 bp], 23416097 duplicates)